使用Arrow管理数据

在之前的数据挖掘:是时候更新一下TCGA的数据了推文中,保存TCGA的数据就是使用Arrow格式,因为占空间小,读写速度快,多语言支持(我主要使用的3种语言都支持)

Format

https://arrow.apache.org

Apache Arrow defines a language-independent columnar memory format for flat and hierarchical data, organized for efficient analytic operations on modern hardware like CPUs and GPUs. The Arrow memory format also supports zero-copy reads for lightning-fast data access without serialization overhead.

Language Supported

Arrow's libraries implement the format and provide building blocks for a range of use cases, including high performance analytics. Many popular projects use Arrow to ship columnar data efficiently or as the basis for analytic engines.

Libraries are available for C, C++, C#, Go, Java, JavaScript, Julia, MATLAB, Python, R, Ruby, and Rust.

Ecosystem

Apache Arrow is software created by and for the developer community. We are dedicated to open, kind communication and consensus decisionmaking. Our committers come from a range of organizations and backgrounds, and we welcome all to participate with us.

R

install.packages("arrow")

library(arrow)

write iris to iris.arrow and compressed by zstd

arrow::write_ipc_file(iris,'iris.arrow', compression = "zstd",compression_level=1)

read iris.arrow as DataFrame

iris=arrow::read_ipc_file('iris.arrow')

python

conda install -y pandas pyarrow

import pandas as pd

read iris.arrow as DataFrame

iris=pd.read_feather('iris.arrow')

write iris to iris.arrow and compressed by zstd

iris.to_feather('iris.arrow',compression='zstd', compression_level=1)

Julia

using Pkg

Pkg.add("Arrow","DataFrames")

using Arrow, DataFrames

read iris.arrow as DataFrame

iris = Arrow.Table("iris.arrow") |> DataFrame

write iris to iris.arrow, using 8 threads and compressed by zstd

Arrow.write("iris.arrow",iris,compress=:zstd,ntasks=8)

相关推荐
IvorySQL2 小时前
PostgreSQL 日报|修复截断 zstd 备份检测(10 月 9 日)
数据库·postgresql
刘胡子大叔2 小时前
SQL 脚本的导入顺序
数据库·sql
代码什么用3 小时前
Spring对IoC的实现
数据库·spring
hz567895 小时前
涉密视频会议设备配置指南:终端、音视频采集与配套设施选型
服务器·网络·数据库·安全·实时音视频·信息与通信·智能硬件
广州浮点FLOATLIC5 小时前
许可证服务器迁移后软件打不开:研发 IT 怎样定位连接问题
linux·服务器·数据库
程序员Sunday5 小时前
MySQL 为什么使用 B+ 树索引?把范围查询、回表和覆盖索引连起来
数据库·mysql
半杯咖啡半行码5 小时前
Qt开发实战:数据库、MV 模式、QProcess与串口通信全攻略
数据库·qt
小米里的大麦5 小时前
16 MySQL 事务
数据库·mysql
西柚小萌新5 小时前
【LLM&&AI应用开发 八股文】--4.3.Agent智能体(下)
java·开发语言·数据库
邓工说电6 小时前
智慧断路器安全吗?数据加密、离线保护与合规认证全解读
大数据·数据库·人工智能·智能断路器·炜晔科技