例如:
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE275938
在GSE275938_RAW.tar中下载GSM8488396_7mo-1-out_cellbender_filtered.h5
在R中读取:
library(rhdf5)
aaa <- H5Fopen("GSM8488396_7mo-1-out_cellbender_filtered.h5")
> aaa
HDF5 FILE
name /
filename
name otype dclass dim
0 droplet_latents H5I_GROUP
1 global_latents H5I_GROUP
2 matrix H5I_GROUP
3 metadata H5I_GROUP
> aaamatrix
aaamatrixbarcodes aaamatrixfeatures aaamatrixindptr
aaamatrixdata aaamatrixindices aaamatrixshape