VirusTaxo：病毒物种注释

https://github.com/omics-lab/VirusTaxo

安装

git clone https://github.com/omics-lab/VirusTaxo
mamba create -n VirusTaxo python=3.10
mamba activate VirusTaxo
cd VirusTaxo
python3 -m venv environment
source ./environment/bin/activate
pip install -r requirements.txt
chmod 755 *.py
python3 predict.py -h
####数据库下载链接vt_db_jan21_2024.tar.gz
https://drive.google.com/file/d/1gz0n5oHomWjpT0HXsrqh8hTLqmqiqgJs/view?pli=1
tar -xzvf (下载的库)

使用

python3 predict.py --model_path (path)/vt_db_jan21_2024/DNA_RNA_18451_k20.pkl --seq ${i} > output.txt

Entropy<0.5的被认为可信