R语言：如何安装包“linkET”

生信学习小达人2024-08-21 22:19

自己在R语言中安装包"linkET"时报错不存在叫'linket'这个名字的程辑包

尝试了install.packages("linkET")和BiocManager::install("linkET")两种安装办法都不行

R 复制代码

 >install.packages("linkET")
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:

https://cran.rstudio.com/bin/windows/Rtools/
将程序包安装入'C:/Users/86150/AppData/Local/R/win-library/4.3'
(因为'lib'没有被指定)
Warning in install.packages :
  package 'linkET' is not available for this version of R

A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
> BiocManager::install("linkET")
'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cran.rstudio.com/
Bioconductor version 3.18 (BiocManager 1.30.23), R 4.3.2 (2023-10-31 ucrt)
Installing package(s) 'linkET'
Installation paths not writeable, unable to update packages

解决办法：利用 devtools::install_github（）的安装方式进行安装

R 复制代码

##安装usethis
install.packages("usethis")
##加载usethis

library(usethis)
##安装devtools

install.packages("devtools")
##加载devtools

library(devtools)
##安装LinkET

devtools::install_github("Hy4m/linkET", force = TRUE)

显示 linKET安装成功